12 files changed, 59 insertions, 70 deletions

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 4b018cb4..60262d56 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -61,7 +61,7 @@ The documentation has been migrated to ReadTheDocs:
 This release introduces the REST API, and requires updating HTTP server
 configuration to enable URL rewriting, see:
 - https://shaarli.github.io/api-documentation/
-- https://github.com/shaarli/Shaarli/wiki/Server-configuration
+- https://shaarli.readthedocs.io/en/master/Server-configuration/
 
 **WARNING**: Shaarli now requires PHP 5.5+.
 
diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
index bb82951d..03564fd2 100644
--- a/CONTRIBUTING.md
+++ b/CONTRIBUTING.md
@@ -54,7 +54,7 @@ Please report any problem you might find.
  * starting from branch ` master`, switch to a new branch (eg. `git checkout -b my-awesome-feature`)
  * edit the required files (from the Github web interface or your text editor)
  * add and commit your changes with a meaningful commit message (eg `Cool new feature, fixes issue #1001`)
- * run unit tests against your patched version, see [Running unit tests](https://github.com/shaarli/Shaarli/wiki/Running-unit-tests)
+ * run unit tests against your patched version, see [Running unit tests](https://shaarli.readthedocs.io/en/master/Unit-tests/#run-unit-tests)
  * Open your fork in the Github web interface and click the "Compare and Pull Request" button, enter required info and submit your Pull Request.
 
 All changes you will do on the `my-awesome-feature`  in the future will be added to your Pull Request. Don't work directly on the master branch, don't do unrelated work on your  `my-awesome-feature` branch.
diff --git a/application/LinkDB.php b/application/LinkDB.php
index 9308164a..22c1f0ab 100644
--- a/application/LinkDB.php
+++ b/application/LinkDB.php
@@ -249,7 +249,7 @@ class LinkDB implements Iterator, Countable, ArrayAccess
         $link = array(
             'id' => 1,
             'title'=>' Shaarli: the personal, minimalist, super-fast, no-database delicious clone',
-            'url'=>'https://github.com/shaarli/Shaarli/wiki',
+            'url'=>'https://shaarli.readthedocs.io',
             'description'=>'Welcome to Shaarli! This is your first public bookmark. To edit or delete me, you must first login.
 
 To learn how to use Shaarli, consult the link "Help/documentation" at the bottom of this page.
diff --git a/application/config/ConfigManager.php b/application/config/ConfigManager.php
index 8eab26f1..0fc5a5c7 100644
--- a/application/config/ConfigManager.php
+++ b/application/config/ConfigManager.php
@@ -9,8 +9,8 @@ use Shaarli\Config\Exception\UnauthorizedConfigException;
  *
  * Manages all Shaarli's settings.
  * See the documentation for more information on settings:
- *   - doc/Shaarli-configuration.html
- *   - https://github.com/shaarli/Shaarli/wiki/Shaarli-configuration
+ *   - doc/md/Shaarli-configuration.md
+ *   - https://shaarli.readthedocs.io/en/master/Shaarli-configuration/#configuration
  */
 class ConfigManager
 {
diff --git a/composer.json b/composer.json
index 756ea588..afb8aca4 100644
--- a/composer.json
+++ b/composer.json
@@ -6,7 +6,7 @@
     "homepage": "https://github.com/shaarli/Shaarli",
     "support": {
         "issues": "https://github.com/shaarli/Shaarli/issues",
-        "wiki": "https://github.com/shaarli/Shaarli/wiki"
+        "wiki": "https://shaarli.readthedocs.io"
     },
     "keywords": ["bookmark", "link", "share", "web"],
     "config": {
diff --git a/doc/md/Plugin-System.md b/doc/md/Plugin-System.md
index 30f0ae74..cbec04c0 100644
--- a/doc/md/Plugin-System.md
+++ b/doc/md/Plugin-System.md
@@ -49,10 +49,10 @@ hook_<plugin_name>_<hook_name>($data, $conf)
 
 Parameters:
 
-- data: see [$data section](https://github.com/shaarli/Shaarli/wiki/Plugin-System#plugins-data)
+- data: see [$data section](https://shaarli.readthedocs.io/en/master/Plugin-System/#plugins-data)
 - conf: the `ConfigManager` instance.
 
-For exemple, if my plugin want to add data to the header, this function is needed:
+For example, if my plugin want to add data to the header, this function is needed:
 
     hook_demo_plugin_render_header
 
diff --git a/doc/md/Plugins.md b/doc/md/Plugins.md
index 7d40637f..463dae17 100644
--- a/doc/md/Plugins.md
+++ b/doc/md/Plugins.md
@@ -72,4 +72,4 @@ Usage of each plugin is documented in it's README file:
 
 #### Third party plugins
 
-See [Community & related software](https://github.com/shaarli/Shaarli/wiki/Community-%26-Related-software#third-party-plugins)
+See [Community & related software](https://shaarli.readthedocs.io/en/master/Community-&-Related-software/)
diff --git a/doc/md/Security.md b/doc/md/Security.md
index 36f629af..65db4225 100644
--- a/doc/md/Security.md
+++ b/doc/md/Security.md
@@ -1,9 +1,6 @@
 ## Client browser
 - Shaarli relies on `HTTP_REFERER` for some functions (like redirects and clicking on tags). If you have disabled or masqueraded `HTTP_REFERER` in your browser, some features of Shaarli may not work
 
-## PHP
-- `magic_quotes` is an horrible option of PHP which is often activated on servers. No serious developer should rely on this horror to secure their code against SQL injections. You should disable it (and Shaarli expects this option to be disabled). Nevertheless, I have added code to cope with `magic_quotes` on, so you should not be bothered even on crappy hosts.
-
 ## Server and sessions
 - Directories are protected using `.htaccess` files
 - Forms are protected against XSRF (Cross-site requests forgery):
diff --git a/doc/md/index.md b/doc/md/index.md
index b10e3cf4..24ada6c7 100644
--- a/doc/md/index.md
+++ b/doc/md/index.md
@@ -37,7 +37,7 @@ Login: `demo`; Password: `demo`
     - daily RSS feed
 - permalinks for easy reference
 - links can be public or private
-- extensible through [plugins](https://github.com/shaarli/Shaarli/wiki/Plugins#plugin-usage)
+- extensible through [plugins](https://shaarli.readthedocs.io/en/master/Plugins/#plugin-usage)
 
 ### Tag, view and search your links!
 - add a custom title and description to archived links
diff --git a/index.php b/index.php
index 23c8d473..7df6d819 100644
--- a/index.php
+++ b/index.php
@@ -48,8 +48,8 @@ if (! file_exists(__DIR__ . '/vendor/autoload.php')) {
         ."If you installed Shaarli through Git or using the development branch,\n"
         ."please refer to the installation documentation to install PHP"
         ." dependencies using Composer:\n"
-        ."- https://github.com/shaarli/Shaarli/wiki/Server-requirements\n"
-        ."- https://github.com/shaarli/Shaarli/wiki/Download-and-Installation";
+        ."- https://shaarli.readthedocs.io/en/master/Server-requirements/\n"
+        ."- https://shaarli.readthedocs.io/en/master/Download-and-Installation/";
     exit;
 }
 require_once 'inc/rain.tpl.class.php';
@@ -133,15 +133,6 @@ date_default_timezone_set($conf->get('general.timezone', 'UTC'));
 
 ob_start();  // Output buffering for the page cache.
 
-// In case stupid admin has left magic_quotes enabled in php.ini:
-if (get_magic_quotes_gpc())
-{
-    function stripslashes_deep($value) { $value = is_array($value) ? array_map('stripslashes_deep', $value) : stripslashes($value); return $value; }
-    $_POST = array_map('stripslashes_deep', $_POST);
-    $_GET = array_map('stripslashes_deep', $_GET);
-    $_COOKIE = array_map('stripslashes_deep', $_COOKIE);
-}
-
 // Prevent caching on client side or proxy: (yes, it's ugly)
 header("Last-Modified: " . gmdate("D, d M Y H:i:s") . " GMT");
 header("Cache-Control: no-store, no-cache, must-revalidate");
@@ -186,42 +177,42 @@ if (isset($_SERVER['HTTP_ACCEPT_LANGUAGE'])) {
  */
 function setup_login_state($conf)
 {
-        if ($conf->get('security.open_shaarli')) {
-            return true;
-        }
-        $userIsLoggedIn = false; // By default, we do not consider the user as logged in;
-        $loginFailure = false; // If set to true, every attempt to authenticate the user will fail. This indicates that an important condition isn't met.
-        if (! $conf->exists('credentials.login')) {
-            $userIsLoggedIn = false;  // Shaarli is not configured yet.
-            $loginFailure = true;
-        }
-        if (isset($_COOKIE['shaarli_staySignedIn']) &&
-            $_COOKIE['shaarli_staySignedIn']===STAY_SIGNED_IN_TOKEN &&
-            !$loginFailure)
-        {
-            fillSessionInfo($conf);
-            $userIsLoggedIn = true;
-        }
-        // If session does not exist on server side, or IP address has changed, or session has expired, logout.
-        if (empty($_SESSION['uid'])
+    if ($conf->get('security.open_shaarli')) {
+        return true;
+    }
+    $userIsLoggedIn = false; // By default, we do not consider the user as logged in;
+    $loginFailure = false; // If set to true, every attempt to authenticate the user will fail. This indicates that an important condition isn't met.
+    if (! $conf->exists('credentials.login')) {
+        $userIsLoggedIn = false;  // Shaarli is not configured yet.
+        $loginFailure = true;
+    }
+    if (isset($_COOKIE['shaarli_staySignedIn']) &&
+        $_COOKIE['shaarli_staySignedIn']===STAY_SIGNED_IN_TOKEN &&
+        !$loginFailure)
+    {
+        fillSessionInfo($conf);
+        $userIsLoggedIn = true;
+    }
+    // If session does not exist on server side, or IP address has changed, or session has expired, logout.
+    if (empty($_SESSION['uid'])
         || ($conf->get('security.session_protection_disabled') === false && $_SESSION['ip'] != allIPs())
         || time() >= $_SESSION['expires_on'])
-        {
-            logout();
-            $userIsLoggedIn = false;
-            $loginFailure = true;
-        }
-        if (!empty($_SESSION['longlastingsession'])) {
-            $_SESSION['expires_on']=time()+$_SESSION['longlastingsession']; // In case of "Stay signed in" checked.
-        }
-        else {
-            $_SESSION['expires_on']=time()+INACTIVITY_TIMEOUT; // Standard session expiration date.
-        }
-        if (!$loginFailure) {
-            $userIsLoggedIn = true;
-        }
-
-        return $userIsLoggedIn;
+    {
+        logout();
+        $userIsLoggedIn = false;
+        $loginFailure = true;
+    }
+    if (!empty($_SESSION['longlastingsession'])) {
+        $_SESSION['expires_on']=time()+$_SESSION['longlastingsession']; // In case of "Stay signed in" checked.
+    }
+    else {
+        $_SESSION['expires_on']=time()+INACTIVITY_TIMEOUT; // Standard session expiration date.
+    }
+    if (!$loginFailure) {
+        $userIsLoggedIn = true;
+    }
+
+    return $userIsLoggedIn;
 }
 $userIsLoggedIn = setup_login_state($conf);
 
@@ -245,10 +236,10 @@ function allIPs()
  */
 function fillSessionInfo($conf)
 {
-        $_SESSION['uid'] = sha1(uniqid('',true).'_'.mt_rand()); // Generate unique random number (different than phpsessionid)
-        $_SESSION['ip']=allIPs();                // We store IP address(es) of the client to make sure session is not hijacked.
-        $_SESSION['username']= $conf->get('credentials.login');
-        $_SESSION['expires_on']=time()+INACTIVITY_TIMEOUT;  // Set session expiration.
+    $_SESSION['uid'] = sha1(uniqid('',true).'_'.mt_rand()); // Generate unique random number (different than phpsessionid)
+    $_SESSION['ip']=allIPs();                // We store IP address(es) of the client to make sure session is not hijacked.
+    $_SESSION['username']= $conf->get('credentials.login');
+    $_SESSION['expires_on']=time()+INACTIVITY_TIMEOUT;  // Set session expiration.
 }
 
 /**
@@ -265,7 +256,7 @@ function check_auth($login, $password, $conf)
     $hash = sha1($password . $login . $conf->get('credentials.salt'));
     if ($login == $conf->get('credentials.login') && $hash == $conf->get('credentials.hash'))
     {   // Login/password is correct.
-                fillSessionInfo($conf);
+        fillSessionInfo($conf);
         logm($conf->get('resource.log'), $_SERVER['REMOTE_ADDR'], 'Login successful');
         return true;
     }
@@ -394,9 +385,10 @@ if (isset($_POST['login']))
         // If user wants to keep the session cookie even after the browser closes:
         if (!empty($_POST['longlastingsession']))
         {
-                        setcookie('shaarli_staySignedIn', STAY_SIGNED_IN_TOKEN, time()+31536000, WEB_PATH);
-            $_SESSION['longlastingsession']=31536000;  // (31536000 seconds = 1 year)
-            $_SESSION['expires_on']=time()+$_SESSION['longlastingsession'];  // Set session expiration on server-side.
+            $_SESSION['longlastingsession'] = 31536000; // (31536000 seconds = 1 year)
+            $expiration = time() + $_SESSION['longlastingsession']; // calculate relative cookie expiration (1 year from now)
+            setcookie('shaarli_staySignedIn', STAY_SIGNED_IN_TOKEN, $expiration, WEB_PATH);
+            $_SESSION['expires_on'] = $expiration;  // Set session expiration on server-side.
 
             $cookiedir = ''; if(dirname($_SERVER['SCRIPT_NAME'])!='/') $cookiedir=dirname($_SERVER["SCRIPT_NAME"]).'/';
             session_set_cookie_params($_SESSION['longlastingsession'],$cookiedir,$_SERVER['SERVER_NAME']); // Set session cookie expiration on client side
@@ -803,7 +795,7 @@ function renderPage($conf, $pluginManager, $LINKSDB, $history)
             $maxcount = max($maxcount, $value);
         }
 
-        alphabetical_sort($tags, true, true);
+        alphabetical_sort($tags, false, true);
 
         $tagList = array();
         foreach($tags as $key => $value) {
@@ -1233,7 +1225,7 @@ function renderPage($conf, $pluginManager, $LINKSDB, $history)
         // Linkdate is kept here to:
         //   - use the same permalink for notes as they're displayed when creating them
         //   - let users hack creation date of their posts
-        //     See: https://github.com/shaarli/Shaarli/wiki/Datastore-hacks#changing-the-timestamp-for-a-link
+        //     See: https://shaarli.readthedocs.io/en/master/Various-hacks/#changing-the-timestamp-for-a-shaare
         $linkdate = escape($_POST['lf_linkdate']);
         if (isset($LINKSDB[$id])) {
             // Edit
diff --git a/plugins/playvideos/README.md b/plugins/playvideos/README.md
index b1698470..ab4be22a 100644
--- a/plugins/playvideos/README.md
+++ b/plugins/playvideos/README.md
@@ -8,7 +8,7 @@ This uses code from https://zaius.github.io/youtube_playlist/ and is currently o
 
 #### Installation and setup
 
-This is a default Shaarli plugin, you just have to enable it. See https://github.com/shaarli/Shaarli/wiki/Shaarli-configuration/
+This is a default Shaarli plugin, you just have to enable it. See https://shaarli.readthedocs.io/en/master/Shaarli-configuration/
 
 
 #### Troubleshooting
diff --git a/tpl/default/tools.html b/tpl/default/tools.html
index 35173d17..72fd58af 100644
--- a/tpl/default/tools.html
+++ b/tpl/default/tools.html
@@ -97,7 +97,7 @@
             var%20desc=document.getSelection().toString();
             if(desc.length>4000){
               desc=desc.substr(0,4000)+'...';
-              alert("{function="str_replace(' ', '%20', t('The selected text is too long, it will be truncated.'))"}");
+              alert('{function="str_replace(' ', '%20', t('The selected text is too long, it will be truncated.'))"}');
             }
             window.open(
               '{$pageabsaddr}?private=1&amp;post='+